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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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112 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ACVR2A
ENSSSCG00000015669
ENSG00000121989
Activin receptor type-2A precursor
Tissue enhanced
Detected in all
lens:
65.2
ADAMTS17
ENSSSCG00000038452
ENSG00000140470
ADAM metallopeptidase with thrombospondin type 1 motif 17
Tissue enriched
Detected in many
lens:
63.4
ADAMTS18
ENSSSCG00000038627
ENSG00000140873
ADAM metallopeptidase with thrombospondin type 1 motif 18
Tissue enriched
Detected in many
lens:
62.4
AKR1B1
ENSSSCG00000040608
ENSG00000085662
Aldose reductase
Tissue enhanced
Detected in all
kidney:
55.9
lens:
113.2
male glands:
56.6
APBA3
ENSSSCG00000013492
ENSG00000011132
Amyloid beta precursor protein binding family A member 3
Tissue enriched
Detected in all
lens:
86.9
ARHGAP12
ENSSSCG00000011026
ENSG00000165322
Rho GTPase activating protein 12
Tissue enriched
Detected in all
lens:
120.9
ASCC2
ENSSSCG00000025186
ENSG00000100325
Activating signal cointegrator 1 complex subunit 2
Tissue enhanced
Detected in all
lens:
55.2
BCL2L13
ENSSSCG00000040373
ENSG00000099968
BCL2 like 13
Tissue enhanced
Detected in all
lens:
75.6
BFSP1
ENSSSCG00000007084
ENSG00000125864
Beaded filament structural protein 1
Tissue enriched
Detected in some
lens:
933.0
BMT2
ENSSSCG00000021466
ENSG00000164603
Base methyltransferase of 25S rRNA 2 homolog
Tissue enriched
Detected in all
lens:
70.1
C19orf84
ENSSSCG00000039649
ENSG00000262874
Chromosome 19 open reading frame 84
Group enriched
Detected in many
cervix:
6.4
lens:
24.1
CDPF1
ENSSSCG00000000005
ENSG00000205643
Cysteine rich DPF motif domain containing 1
Tissue enriched
Detected in all
lens:
67.8
CELF1
ENSSSCG00000013233
ENSG00000149187
CUGBP Elav-like family member 1
Tissue enriched
Detected in all
lens:
174.0
CHRNB4
ENSSSCG00000001753
ENSG00000117971
Cholinergic receptor nicotinic beta 4 subunit
Tissue enhanced
Detected in some
cartilage:
23.5
lens:
33.0
CRYBA1
ENSSSCG00000040641
ENSG00000108255
Crystallin beta A1
Tissue enriched
Detected in single
lens:
2538.5
CRYBA2
ENSSSCG00000040776
ENSG00000163499
Crystallin beta A2
Tissue enriched
Detected in single
lens:
694.3
CRYBB1
ENSSSCG00000009964
ENSG00000100122
Beta-crystallin B1
Tissue enriched
Detected in single
lens:
1037.4
CRYBB2
ENSSSCG00000009955
ENSG00000244752
Crystallin beta B2
Tissue enriched
Detected in single
lens:
2196.1
CRYBB3
ENSSSCG00000009954
ENSG00000100053
Crystallin beta B3
Tissue enriched
Detected in single
lens:
1634.4
CRYGB
ENSSSCG00000039241
ENSG00000182187
Crystallin gamma B
Tissue enriched
Detected in single
lens:
2488.8
CRYGC
ENSSSCG00000039620
ENSG00000163254
Crystallin gamma C
Tissue enriched
Detected in single
lens:
868.5
CRYGD
ENSSSCG00000034967
ENSG00000118231
Crystallin gamma D
Tissue enriched
Detected in single
lens:
206.4
CRYGN
ENSSSCG00000038413
ENSG00000127377
Crystallin gamma N
Tissue enriched
Detected in single
lens:
78.6
CRYGS
ENSSSCG00000040431
ENSG00000213139
Crystallin gamma S
Tissue enriched
Detected in single
lens:
824.8
DDX19B
ENSSSCG00000002722
ENSG00000157349
DEAD-box helicase 19B
Low tissue specificity
Detected in all
DEFB1
ENSSSCG00000027555
Beta-defensin 1
Tissue enriched
Detected in some
lens:
244.7
DKK1
ENSSSCG00000010428
ENSG00000107984
Dickkopf-related protein 1 precursor
Group enriched
Detected in some
lens:
15.9
male glands:
27.4
DNASE2B
ENSSSCG00000026532
ENSG00000137976
Deoxyribonuclease 2 beta
Tissue enriched
Detected in some
lens:
185.4
ERI1
ENSSSCG00000033634
ENSG00000104626
Exoribonuclease 1
Tissue enriched
Detected in all
lens:
57.1
EXOC1L
ENSSSCG00000022882
ENSG00000250821
Exocyst complex component 1 like
Tissue enriched
Detected in some
lens:
31.7
FBXW4
ENSSSCG00000010566
ENSG00000107829
F-box and WD repeat domain containing 4
Tissue enhanced
Detected in all
lens:
80.8
FOXE3
ENSSSCG00000003884
ENSG00000186790
Forkhead box E3
Tissue enriched
Detected in some
lens:
18.8
GJA3
ENSSSCG00000036798
ENSG00000121743
Gap junction protein alpha 3
Tissue enriched
Detected in some
lens:
142.9
GJA8
ENSSSCG00000036239
ENSG00000121634
Gap junction protein alpha 8
Tissue enriched
Detected in single
lens:
215.0
GJE1
ENSSSCG00000034307
ENSG00000203733
Gap junction protein epsilon 1
Tissue enriched
Detected in single
lens:
28.5
GRIFIN
ENSSSCG00000007569
ENSG00000275572
Grifin
Tissue enriched
Detected in some
lens:
1138.2
HLCS
ENSSSCG00000012059
ENSG00000159267
Holocarboxylase synthetase
Tissue enriched
Detected in all
lens:
137.6
HMX1
ENSSSCG00000008720
ENSG00000215612
H6 family homeobox 1
Tissue enriched
Detected in some
lens:
39.2
HSD11B1
ENSSSCG00000015616
ENSG00000117594
Hydroxysteroid 11-beta dehydrogenase 1
Tissue enhanced
Detected in all
lens:
85.8
liver:
92.3
KIAA1024
ENSSSCG00000001775
ENSG00000169330
KIAA1024
Tissue enriched
Detected in all
lens:
56.1
LCTL
ENSSSCG00000004947
ENSG00000188501
Lactase like
Tissue enriched
Detected in single
lens:
232.6
LGSN
ENSSSCG00000004450
ENSG00000146166
Lengsin, lens protein with glutamine synthetase domain
Tissue enriched
Detected in single
lens:
570.2
LIM2
ENSSSCG00000003232
ENSG00000105370
Lens intrinsic membrane protein 2
Tissue enriched
Detected in single
lens:
628.1
LYPLAL1
ENSSSCG00000010817
ENSG00000143353
Lysophospholipase like 1
Tissue enriched
Detected in all
lens:
66.8
MGARP
ENSSSCG00000009062
ENSG00000137463
Protein MGARP
Group enriched
Detected in some
cornea:
99.5
lens:
163.1
MIP
ENSSSCG00000000400
ENSG00000135517
Major intrinsic protein of lens fiber
Tissue enriched
Detected in single
lens:
675.3
MRPL9
ENSSSCG00000028343
ENSG00000143436
Mitochondrial ribosomal protein L9
Low tissue specificity
Detected in all
MYL10
ENSSSCG00000007680
ENSG00000106436
Myosin light chain 10
Group enriched
Detected in some
cartilage:
8.6
lens:
21.4
synovial tissue:
7.9
na
ENSSSCG00000001035
Tissue enriched
Detected in some
lens:
35.5
na
ENSSSCG00000007464
Tissue enriched
Detected in some
lens:
9.2
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